optimize NaViT with SDPA and vectorized forward pass (#353)

- Replace manual attention with F.scaled_dot_product_attention
- Use repeat_interleave instead of meshgrid for position computation
- Build image_ids efficiently with repeat_interleave instead of F.pad
- Remove unused Rearrange import

~56% speedup (91ms -> 58ms on 512 variable-sized images)
Numerically equivalent (max diff ~5e-4, within flash attention tolerance)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude <noreply@anthropic.com>

vit_pytorch/na_vit.py

@@ -9,7 +9,6 @@ from torch import nn, Tensor
 from torch.nn.utils.rnn import pad_sequence as orig_pad_sequence
 
 from einops import rearrange, repeat
-from einops.layers.torch import Rearrange
 
 # helpers
 
@@ -117,8 +116,7 @@ class Attention(nn.Module):
         self.q_norm = RMSNorm(heads, dim_head)
         self.k_norm = RMSNorm(heads, dim_head)
 
-        self.attend = nn.Softmax(dim = -1)
-        self.dropout = nn.Dropout(dropout)
+        self.dropout_p = dropout
 
         self.to_q = nn.Linear(dim, inner_dim, bias = False)
         self.to_kv = nn.Linear(dim, inner_dim * 2, bias = False)
@@ -145,19 +143,22 @@ class Attention(nn.Module):
         q = self.q_norm(q)
         k = self.k_norm(k)
 
-        dots = torch.matmul(q, k.transpose(-1, -2))
-
+        # combine masks if both exist
+        if exists(mask) or exists(attn_mask):
             if exists(mask):
                 mask = rearrange(mask, 'b j -> b 1 1 j')
-            dots = dots.masked_fill(~mask, -torch.finfo(dots.dtype).max)
+            if exists(mask) and exists(attn_mask):
+                attn_mask = mask & attn_mask
+            elif exists(mask):
+                attn_mask = mask
 
-        if exists(attn_mask):
-            dots = dots.masked_fill(~attn_mask, -torch.finfo(dots.dtype).max)
+        out = F.scaled_dot_product_attention(
+            q, k, v,
+            attn_mask = attn_mask,
+            dropout_p = self.dropout_p if self.training else 0.,
+            scale = 1.  # RMSNorm already includes sqrt(dim) scaling
+        )
 
-        attn = self.attend(dots)
-        attn = self.dropout(attn)
-
-        out = torch.matmul(attn, v)
         out = rearrange(out, 'b h n d -> b n (h d)')
         return self.to_out(out)
 
@@ -281,38 +282,41 @@ class NaViT(nn.Module):
         for images in batched_images:
             num_images.append(len(images))
 
-            sequences = []
-            positions = []
-            image_ids = torch.empty((0,), device = device, dtype = torch.long)
-
-            for image_id, image in enumerate(images):
+            # compute patch dimensions for all images
+            patch_dims = []
+            for image in images:
                 assert image.ndim == 3 and image.shape[0] == c
                 image_dims = image.shape[-2:]
                 assert all([divisible_by(dim, p) for dim in image_dims]), f'height and width {image_dims} of images must be divisible by patch size {p}'
+                patch_dims.append((image_dims[0] // p, image_dims[1] // p))
 
-                ph, pw = map(lambda dim: dim // p, image_dims)
+            # extract patches for all images
+            sequences = [rearrange(img, 'c (h p1) (w p2) -> (h w) (c p1 p2)', p1=p, p2=p) for img in images]
 
-                pos = torch.stack(torch.meshgrid((
-                    arange(ph),
-                    arange(pw)
-                ), indexing = 'ij'), dim = -1)
-
-                pos = rearrange(pos, 'h w c -> (h w) c')
-                seq = rearrange(image, 'c (h p1) (w p2) -> (h w) (c p1 p2)', p1 = p, p2 = p)
-
-                seq_len = seq.shape[-2]
+            # compute positions using repeat_interleave (faster than meshgrid per image)
+            positions = []
+            for ph, pw in patch_dims:
+                h_idx = arange(ph).repeat_interleave(pw)
+                w_idx = arange(pw).repeat(ph)
+                positions.append(torch.stack([h_idx, w_idx], dim=-1))
 
+            # handle token dropout
             if has_token_dropout:
+                for i, (seq, pos) in enumerate(zip(sequences, positions)):
+                    image_dims = images[i].shape[-2:]
                     token_dropout = self.calc_token_dropout(*image_dims)
+                    seq_len = seq.shape[0]
                     num_keep = max(1, int(seq_len * (1 - token_dropout)))
                     keep_indices = torch.randn((seq_len,), device=device).topk(num_keep, dim=-1).indices
+                    sequences[i] = seq[keep_indices]
+                    positions[i] = pos[keep_indices]
 
-                    seq = seq[keep_indices]
-                    pos = pos[keep_indices]
-
-                image_ids = F.pad(image_ids, (0, seq.shape[-2]), value = image_id)
-                sequences.append(seq)
-                positions.append(pos)
+            # build image_ids efficiently using repeat_interleave
+            patch_counts = [seq.shape[0] for seq in sequences]
+            image_ids = torch.repeat_interleave(
+                arange(len(images)),
+                torch.tensor(patch_counts, device=device)
+            )
 
             batched_image_ids.append(image_ids)
             batched_sequences.append(torch.cat(sequences, dim=0))